AI SOFTWARE AND PRODUCTIVITY

Zotero vs Mendeley

Guide · 2 min read · Last updated 2026-10-31

Both Zotero and Mendeley are reference managers that collect citations, store PDFs, organise libraries and insert citations into documents. They differ in ownership, features, storage and collaboration, and these details change, so check each tool's current documentation before you commit.

How to compare

QuestionWhat to check
Cost and storageFree tier limits, paid storage, institutional access
Openness and ownershipOpen-source versus company-owned; data export options
Citation stylesNumber of styles and ease of editing styles
Word processor supportWord, LibreOffice and Google Docs integration
Browser captureQuality of the web connector for PubMed and publishers
CollaborationShared libraries and groups
PDF handlingReading, annotation and sync
De-duplicationTools for merging duplicates
LongevityEasy export to standard formats such as RIS or BibTeX

Practical advice

  • Choose one for each project and use it consistently.
  • Check what your institution or collaborators use, since shared libraries make collaboration easier.
  • Test with 20 references from your topic.
  • Make sure you can export your library in a standard format so that you can move later.
  • Back up regardless of the tool.

Illustrative example

Invented for teaching. A team of four needs a shared reference library for a review. They test both tools, find that their institution's library supports one for training and that shared-library features meet their needs, and choose it. They agree to export a backup file each month.

When switching is worth it

Switch only if the current tool blocks something you need, such as shared libraries for a team or a style your journal requires. Export your library to a standard format, import it into the new tool in a test project, and check a sample of records, notes and PDF links. Keep the old library until you have finished the manuscript, so that you can recover any items that did not transfer.

Common pitfalls

  • Switching tools mid-project without a tested export.
  • Assuming that a tool's free features will stay the same.

Key takeaways

  • Both do the core job; choose on collaboration, support and export options.
  • Test and back up.

References and further reading

  1. Zotero documentation. Link
  2. Mendeley Reference Manager (Elsevier). Link

Related reading

This page is general educational information about research methods. It is not medical, legal or regulatory advice; follow your institution's ethics board and your target journal's instructions.