LITERATURE SEARCHING AND PUBMED

How to Organize References for a Literature Review

Guide · 2 min read · Last updated 2026-10-31

Organise references from the beginning with a reference manager, a consistent folder and tag scheme, a notes system and a single extraction table. A little structure early prevents duplicate records, lost PDFs and untraceable citations.

Set-up

  1. Choose a reference manager (for example Zotero or Mendeley) and use it from day one. See How to Use Zotero for Reference Management.
  2. Create one library per project with sub-collections such as Search results, To screen, Included, Excluded (with reason).
  3. Use tags for themes, study design and population.
  4. Store PDFs with consistent names, for example FirstAuthor_Year_ShortTitle.pdf.
  5. Keep notes in a short template: question, design, sample, main result, limitations.
  6. Back up the library and PDFs regularly.

An extraction table that scales

Create a spreadsheet with a row per paper and columns for citation, design, population, intervention/exposure, outcomes, main results, limitations and quality. This table becomes the backbone of your narrative or review. For systematic reviews, use a structured form; see the data extraction template.

Illustrative example

Invented for teaching. A student imports 600 records into Zotero, removes duplicates, moves records to Included or Excluded with a tag for the reason, and keeps a spreadsheet for the included studies. When her supervisor asks how many studies used a specific design, she answers in seconds.

Keeping notes useful

Short notes are more useful than long ones. For each paper record the question, design, sample size and setting, the main result with its effect size, and one limitation. Add a line saying which section of your review the paper supports. Revisit the notes at the end of each week and merge related items under tags, so that when you start writing the structure is already visible.

Common pitfalls

  • Saving PDFs on the desktop with random names.
  • Copying citations by hand, which causes errors.
  • Not recording exclusion reasons.

Key takeaways

  • Use a reference manager and a consistent structure.
  • Record decisions and keep a back-up.

References and further reading

  1. Zotero documentation. Link
  2. Mendeley Reference Manager (Elsevier). Link
  3. Page MJ, McKenzie JE, Bossuyt PM, et al. The PRISMA 2020 statement: an updated guideline for reporting systematic reviews. BMJ. 2021;372:n71. doi:10.1136/bmj.n71

Related reading

This page is general educational information about research methods. It is not medical, legal or regulatory advice; follow your institution's ethics board and your target journal's instructions.